Automated, unsupervised textmining - searching for proteins that are frequently mentioned together.
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Fusion
Genes that are sometimes fused into single open reading frames.
STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
Node Content
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VV2343
annotation not available (326 aa)
Predicted Functional Partners:
VVA0807
annotation not available
0.494
VVA1215
annotation not available
0.490
VV0048
annotation not available
0.473
luxP
Autoinducer 2-binding periplasmic protein LuxP; Binds to an autoinducer molecule. This complex then interacts with the LuxQ sensor protein (By similarity)
a tab-delimited file describing the names, domains and annotated functions of the network proteins
Browse interactions in tabular form:
node1
node2
node1 accession
node2 accession
node1 annotation
node2 annotation
score
VV0048
VV1501
VV93_v1c00420
VV93_v1c14100
annotation not available
annotation not available
0.777
VV0048
VV2343
VV93_v1c00420
VV93_v1c20530
annotation not available
annotation not available
0.473
VV0048
VV2395
VV93_v1c00420
VV93_v1c21010
annotation not available
annotation not available
0.754
VV0048
VVA0352
VV93_v1c00420
VV93_v1c33380
annotation not available
annotation not available
0.778
VV0048
VVA0733
VV93_v1c00420
VV93_v1c37290
annotation not available
annotation not available
0.758
VV0048
VVA0807
VV93_v1c00420
VV93_v1c38140
annotation not available
annotation not available
0.635
VV0048
VVA1215
VV93_v1c00420
VV93_v1c41410
annotation not available
annotation not available
0.781
VV0048
luxP
VV93_v1c00420
VV93_v1c41470
annotation not available
Autoinducer 2-binding periplasmic protein LuxP; Binds to an autoinducer molecule. This complex then interacts with the LuxQ sensor protein (By similarity)
0.714
VV1501
VV0048
VV93_v1c14100
VV93_v1c00420
annotation not available
annotation not available
0.777
VV1501
VV2343
VV93_v1c14100
VV93_v1c20530
annotation not available
annotation not available
0.413
VV1501
VV2395
VV93_v1c14100
VV93_v1c21010
annotation not available
annotation not available
0.676
VV1501
VVA0352
VV93_v1c14100
VV93_v1c33380
annotation not available
annotation not available
0.778
VV1501
VVA0733
VV93_v1c14100
VV93_v1c37290
annotation not available
annotation not available
0.713
VV1501
VVA0807
VV93_v1c14100
VV93_v1c38140
annotation not available
annotation not available
0.480
VV1501
VVA1215
VV93_v1c14100
VV93_v1c41410
annotation not available
annotation not available
0.781
VV1501
luxP
VV93_v1c14100
VV93_v1c41470
annotation not available
Autoinducer 2-binding periplasmic protein LuxP; Binds to an autoinducer molecule. This complex then interacts with the LuxQ sensor protein (By similarity)
0.675
VV2342
VV2343
VV93_v1c20520
VV93_v1c20530
annotation not available
annotation not available
0.452
VV2343
VV0048
VV93_v1c20530
VV93_v1c00420
annotation not available
annotation not available
0.473
VV2343
VV1501
VV93_v1c20530
VV93_v1c14100
annotation not available
annotation not available
0.413
VV2343
VV2342
VV93_v1c20530
VV93_v1c20520
annotation not available
annotation not available
0.452
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Network Stats
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Functional enrichments in your networkNote: some enrichments may be expected here (why?) explain columns
Enrichment analysis is still ongoing, please wait ...
Statistical background
For the above enrichment analysis, the following statistical background is assumed: