Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
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Fusion
Genes that are sometimes fused into single open reading frames.
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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
Node Content
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VV2371
annotation not available (196 aa)
Predicted Functional Partners:
VV2373
annotation not available
0.974
VV2372
annotation not available
0.963
VV2370
annotation not available
0.853
VV2374
annotation not available
0.699
VV2756
Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross-linking of the peptide subunits)
a tab-delimited file describing the names, domains and annotated functions of the network proteins
Browse interactions in tabular form:
node1
node2
node1 accession
node2 accession
node1 annotation
node2 annotation
score
VV2072
VV2371
VV93_v1c18360
VV93_v1c20790
annotation not available
annotation not available
0.510
VV2072
VV2372
VV93_v1c18360
VV93_v1c20800
annotation not available
annotation not available
0.498
VV2072
VV2373
VV93_v1c18360
VV93_v1c20810
annotation not available
annotation not available
0.409
VV2369
VV2370
VV93_v1c20770
VV93_v1c20780
annotation not available
annotation not available
0.728
VV2369
VV2371
VV93_v1c20770
VV93_v1c20790
annotation not available
annotation not available
0.584
VV2369
VV2372
VV93_v1c20770
VV93_v1c20800
annotation not available
annotation not available
0.523
VV2369
VV2373
VV93_v1c20770
VV93_v1c20810
annotation not available
annotation not available
0.444
VV2369
VV2374
VV93_v1c20770
VV93_v1c20820
annotation not available
annotation not available
0.673
VV2370
VV2369
VV93_v1c20780
VV93_v1c20770
annotation not available
annotation not available
0.728
VV2370
VV2371
VV93_v1c20780
VV93_v1c20790
annotation not available
annotation not available
0.853
VV2370
VV2372
VV93_v1c20780
VV93_v1c20800
annotation not available
annotation not available
0.847
VV2370
VV2373
VV93_v1c20780
VV93_v1c20810
annotation not available
annotation not available
0.769
VV2370
VV2374
VV93_v1c20780
VV93_v1c20820
annotation not available
annotation not available
0.742
VV2371
VV2072
VV93_v1c20790
VV93_v1c18360
annotation not available
annotation not available
0.510
VV2371
VV2369
VV93_v1c20790
VV93_v1c20770
annotation not available
annotation not available
0.584
VV2371
VV2370
VV93_v1c20790
VV93_v1c20780
annotation not available
annotation not available
0.853
VV2371
VV2372
VV93_v1c20790
VV93_v1c20800
annotation not available
annotation not available
0.963
VV2371
VV2373
VV93_v1c20790
VV93_v1c20810
annotation not available
annotation not available
0.974
VV2371
VV2374
VV93_v1c20790
VV93_v1c20820
annotation not available
annotation not available
0.699
VV2371
VV2756
VV93_v1c20790
VV93_v1c24680
annotation not available
Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross-linking of the peptide subunits)
0.587
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Functional enrichments in your networkNote: some enrichments may be expected here (why?) explain columns
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Statistical background
For the above enrichment analysis, the following statistical background is assumed: