VV2371 protein (Vibrio vulnificus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

VV2371

annotation not available (196 aa)

Predicted Functional Partners:

VV2373

0.974

VV2372

0.963

VV2370

0.853

VV2374

0.699

VV2756

0.587

VV2369

0.584

VV2072

0.510

VV3214

0.437

hisI

0.426

Your Current Organism:

Vibrio vulnificus

NCBI taxonomy Id: 672
Other names: ATCC 27562, BCRC 12905, Beneckea vulnifica, CAIM 610, CCRC 12905, CCUG 13448, CCUG 16394, CIP 75.4, DSM 10143, IFO 15645, JCM 3725, LMG 13545, NBRC 15645, V. vulnificus, Vibrio vulnificus, strain 324

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VV2072	VV2371	VV93_v1c18360	VV93_v1c20790	annotation not available	annotation not available	0.510
VV2072	VV2372	VV93_v1c18360	VV93_v1c20800	annotation not available	annotation not available	0.498
VV2072	VV2373	VV93_v1c18360	VV93_v1c20810	annotation not available	annotation not available	0.409
VV2369	VV2370	VV93_v1c20770	VV93_v1c20780	annotation not available	annotation not available	0.728
VV2369	VV2371	VV93_v1c20770	VV93_v1c20790	annotation not available	annotation not available	0.584
VV2369	VV2372	VV93_v1c20770	VV93_v1c20800	annotation not available	annotation not available	0.523
VV2369	VV2373	VV93_v1c20770	VV93_v1c20810	annotation not available	annotation not available	0.444
VV2369	VV2374	VV93_v1c20770	VV93_v1c20820	annotation not available	annotation not available	0.673
VV2370	VV2369	VV93_v1c20780	VV93_v1c20770	annotation not available	annotation not available	0.728
VV2370	VV2371	VV93_v1c20780	VV93_v1c20790	annotation not available	annotation not available	0.853
VV2370	VV2372	VV93_v1c20780	VV93_v1c20800	annotation not available	annotation not available	0.847
VV2370	VV2373	VV93_v1c20780	VV93_v1c20810	annotation not available	annotation not available	0.769
VV2370	VV2374	VV93_v1c20780	VV93_v1c20820	annotation not available	annotation not available	0.742
VV2371	VV2072	VV93_v1c20790	VV93_v1c18360	annotation not available	annotation not available	0.510
VV2371	VV2369	VV93_v1c20790	VV93_v1c20770	annotation not available	annotation not available	0.584
VV2371	VV2370	VV93_v1c20790	VV93_v1c20780	annotation not available	annotation not available	0.853
VV2371	VV2372	VV93_v1c20790	VV93_v1c20800	annotation not available	annotation not available	0.963
VV2371	VV2373	VV93_v1c20790	VV93_v1c20810	annotation not available	annotation not available	0.974
VV2371	VV2374	VV93_v1c20790	VV93_v1c20820	annotation not available	annotation not available	0.699
VV2371	VV2756	VV93_v1c20790	VV93_v1c24680	annotation not available	Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross-linking of the peptide subunits)	0.587

page 1 of 3

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2020

Credits

Access

Info

About