STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO56074.1Phospholipase_D-nuclease N-terminal. (128 aa)    
Predicted Functional Partners:
SEO56056.1
Hypothetical protein.
 
     0.929
SEO96337.1
Hypothetical protein.
 
     0.776
SEO96353.1
Short C-terminal domain-containing protein.
 
     0.774
SEO55991.1
Hypothetical protein.
 
     0.748
SEO61653.1
Protein of unknown function.
 
     0.733
SEP22401.1
Short C-terminal domain-containing protein.
 
     0.716
SEO55802.1
Uncharacterized conserved protein, DUF2252 family.
 
     0.679
SEO55970.1
Ion channel.
 
     0.667
SEO55837.1
Hypothetical protein.
 
     0.643
SEO55391.1
Uncharacterized membrane protein.
 
     0.559
Your Current Organism:
Blastococcus endophyticus
NCBI taxonomy Id: 673521
Other names: B. endophyticus, Blastococcus endophyticus Zhu et al. 2013 emend. Hezbri et al. 2016, Blastococcus sp. YIM 68236, CCTCC AA 209045, DSM 45413, KCTC 19998, YIM 68236
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.