STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001544075_03117Unannotated protein. (858 aa)    
Predicted Functional Partners:
GCA_001544075_04068
Unannotated protein.
   
 0.992
GCA_001544075_04236
Unannotated protein.
   
 0.914
GCA_001544075_00790
Unannotated protein.
   
 
 0.903
GCA_001544075_01365
Unannotated protein.
 
 0.819
GCA_001544075_02369
Unannotated protein.
   
 0.786
GCA_001544075_02631
Unannotated protein.
   
 0.786
GCA_001544075_01100
Unannotated protein.
   
 0.785
GCA_001544075_01038
Unannotated protein.
   
 
  0.778
GCA_001544075_03253
Unannotated protein.
 
   0.761
GCA_001544075_02456
Unannotated protein.
    
  0.716
Your Current Organism:
Comamonas terrae
NCBI taxonomy Id: 673548
Other names: C. terrae, Comamonas sp. A3-3, Comamonas terrae Chitpirom et al. 2012, NBRC 106524, strain A3-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.