STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMN40016.1HAD-superfamily hydrolase, subfamily IIA. (293 aa)    
Predicted Functional Partners:
AMN40982.1
Metal dependent phosphohydrolase.
 
  
 0.767
AMN40017.1
Diguanylate phosphodiesterase.
       0.654
hisS
histidyl-tRNA synthetase.
 
    0.615
AMN39180.1
Type 11 methyltransferase.
 
     0.614
AMN43143.1
GcrA cell cycle regulator.
  
     0.602
AMN40178.1
Transcriptional regulator, XRE family.
  
     0.597
AMN38569.1
XRE family transcriptional regulator.
  
     0.586
AMN42204.1
Transcriptional regulator, XRE family.
  
     0.580
AMN41022.1
XRE family transcriptional regulator.
  
     0.579
AMN39929.1
Two-component hybrid sensor and regulator.
  
 
   0.569
Your Current Organism:
Rhodoplanes sp. Z2YC6860
NCBI taxonomy Id: 674703
Other names: R. sp. Z2-YC6860, Rhodoplanes sp. Z2-YC6860
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.