STRINGSTRING
Psed_0041 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0041" - Natural resistance-associated macrophage protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0041Natural resistance-associated macrophage protein (434 aa)    
Predicted Functional Partners:
Psed_0040
MgtE integral membrane protein (444 aa)
 
   
  0.942
Psed_2709
NRAMP family Mn2+/Fe2+ transporter (416 aa)
   
     
  0.804
Psed_6167
Urea amidolyase (282 aa)
   
   
  0.612
Psed_6165
Hypothetical protein (252 aa)
   
   
  0.593
Psed_6166
Hypothetical protein (210 aa)
   
   
  0.592
Psed_4265
ATPase (906 aa)
   
 
  0.563
Psed_0349
ATPase (792 aa)
   
 
  0.563
Psed_1044
MgtE integral membrane protein (436 aa)
 
   
  0.515
Psed_1613
Hypothetical protein (103 aa)
   
          0.514
Psed_3521
Hypothetical protein (104 aa)
   
          0.503
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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