STRINGSTRING
Psed_0058 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0058" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0058Hypothetical protein (258 aa)    
Predicted Functional Partners:
Psed_0057
Cytochrome c oxidase caa3-type, assembly factor CtaG-like protein (343 aa)
 
          0.719
Psed_0059
Twin-arginine translocation protein subunit TatB (103 aa)
 
          0.707
Psed_6589
Hypothetical protein (272 aa)
   
          0.643
Psed_2271
GCN5-like N-acetyltransferase (453 aa)
   
          0.581
Psed_5085
Esterase (385 aa)
   
          0.564
Psed_6181
Hypothetical protein (371 aa)
   
          0.525
Psed_4835
Peptidase M48 Ste24p (303 aa)
   
          0.525
Psed_2736
Hypothetical protein (226 aa)
   
          0.523
Psed_6189
Hypothetical protein (222 aa)
   
          0.476
Psed_2610
FAD dependent oxidoreductase (465 aa)
   
          0.474
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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