STRINGSTRING
Psed_0077 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0077" - IclR family transcriptional regulator in Pseudonocardia dioxanivorans
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0077IclR family transcriptional regulator (250 aa)    
Predicted Functional Partners:
Psed_2955
IclR family transcriptional regulator (284 aa)
   
          0.777
Psed_0124
IclR family transcriptional regulator (262 aa)
   
          0.777
Psed_3717
IclR family transcriptional regulator (275 aa)
   
          0.776
Psed_2971
IclR family transcriptional regulator (263 aa)
   
          0.775
Psed_5074
IclR family transcriptional regulator (253 aa)
   
          0.765
Psed_3758
IclR family transcriptional regulator (256 aa)
   
          0.761
Psed_1831
IclR family transcriptional regulator (233 aa)
   
          0.735
Psed_3209
IclR family transcriptional regulator (258 aa)
   
          0.734
Psed_1565
Protocatechuate 3,4-dioxygenase subunit beta (240 aa)
 
     
  0.545
Psed_3035
3-oxoacid CoA-transferase subunit A (482 aa)
         
  0.526
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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