STRINGSTRING
Psed_0078 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0078" - Type 12 methyltransferase in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0078Type 12 methyltransferase (251 aa)    
Predicted Functional Partners:
Psed_0082
Monosaccharide-transporting ATPase (478 aa)
              0.651
Psed_0080
ABC transporter permease (313 aa)
              0.651
Psed_0081
ABC transporter permease (286 aa)
              0.637
Psed_0079
ABC transporter substrate-binding protein (507 aa)
              0.635
Psed_2718
Hypothetical protein (149 aa)
   
          0.566
Psed_6407
Hypothetical protein (203 aa)
     
      0.554
Psed_5147
Type 11 methyltransferase (224 aa)
     
      0.554
Psed_3873
Type 11 methyltransferase (290 aa)
     
      0.554
Psed_3100
Type 11 methyltransferase (198 aa)
     
      0.554
Psed_2793
Type 12 methyltransferase (235 aa)
     
      0.554
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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