STRINGSTRING
Psed_0082 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0082" - Monosaccharide-transporting ATPase in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0082Monosaccharide-transporting ATPase (478 aa)    
Predicted Functional Partners:
Psed_0080
ABC transporter permease (313 aa)
 
   
  0.970
Psed_0079
ABC transporter substrate-binding protein (507 aa)
          0.964
Psed_0081
ABC transporter permease (286 aa)
          0.937
Psed_1354
ABC transporter permease (313 aa)
 
   
  0.764
Psed_1353
ABC transporter permease (294 aa)
   
  0.701
Psed_4090
ABC transporter permease (337 aa)
 
   
  0.697
Psed_2187
ABC transporter permease (316 aa)
 
   
  0.689
Psed_1002
ABC transporter permease (310 aa)
 
   
  0.687
Psed_2372
ABC transporter permease (316 aa)
 
   
  0.684
Psed_3695
ABC transporter permease (347 aa)
   
  0.684
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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