STRINGSTRING
Psed_0086 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0086" - ANTAR domain-containing protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0086ANTAR domain-containing protein (251 aa)    
Predicted Functional Partners:
Psed_2377
GAF domain-containing protein (227 aa)
   
          0.778
Psed_2338
ANTAR domain-containing protein (247 aa)
   
          0.778
Psed_0912
ANTAR domain-containing protein (254 aa)
   
          0.778
Psed_5594
ANTAR domain-containing protein (221 aa)
   
          0.689
Psed_1960
CsbD family protein (57 aa)
   
          0.652
Psed_0711
Hypothetical protein (197 aa)
   
          0.571
Psed_0087
Hypothetical protein (220 aa)
              0.539
Psed_4495
Hypothetical protein (141 aa)
   
          0.488
Psed_1039
Auxin efflux carrier family protein (344 aa)
   
          0.461
Psed_3957
Hypothetical protein (201 aa)
   
          0.449
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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