STRINGSTRING
Psed_0088 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0088" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0088Hypothetical protein (116 aa)    
Predicted Functional Partners:
Psed_0089
SSS sodium solute transporter superfamily protein (545 aa)
 
   
  0.994
Psed_0156
Na+/solute symporter (580 aa)
 
   
  0.940
Psed_0155
Na+/solute symporter (579 aa)
 
   
  0.936
Psed_2717
butyrate--CoA ligase (560 aa)
 
        0.683
Psed_0091
MerR family transcriptional regulator (334 aa)
              0.653
Psed_0090
Hypothetical protein (222 aa)
              0.653
Psed_4795
acetate--CoA ligase (638 aa)
   
        0.610
Psed_4605
acetoacetyl-CoA synthase (660 aa)
   
        0.610
Psed_4246
Benzoate--CoA ligase (555 aa)
   
        0.610
Psed_1491
benzoate-CoA ligase (532 aa)
   
        0.610
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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