STRINGSTRING
Psed_0090 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0090" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0090Hypothetical protein (222 aa)    
Predicted Functional Partners:
Psed_0091
MerR family transcriptional regulator (334 aa)
 
          0.972
Psed_4869
Peptidase M48 Ste24p (379 aa)
   
          0.684
Psed_0089
SSS sodium solute transporter superfamily protein (545 aa)
              0.653
Psed_0088
Hypothetical protein (116 aa)
              0.653
Psed_2473
Major facilitator superfamily protein (589 aa)
   
          0.562
Psed_0092
Hypothetical protein (322 aa)
 
          0.560
Psed_1817
Bifunctional deaminase-reductase domain-containing protein (216 aa)
   
          0.541
Psed_1661
Hypothetical protein (344 aa)
   
          0.472
Psed_0142
RecB family nuclease (585 aa)
   
          0.464
Psed_0257
Hypothetical protein (372 aa)
   
          0.456
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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