STRINGSTRING
Psed_0117 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0117" - Cell cycle protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0117Cell cycle protein (487 aa)    
Predicted Functional Partners:
Psed_0116
Peptidoglycan glycosyltransferase (489 aa)
 
  0.999
Psed_2800
Penicillin-binding protein transpeptidase (928 aa)
 
  0.974
Psed_0115
Serine/threonine protein kinase (880 aa)
 
 
  0.970
Psed_0118
Ser/Thr phosphatase (465 aa)
 
   
  0.966
Psed_0119
FHA domain-containing protein (152 aa)
 
   
  0.945
Psed_0114
Serine/threonine protein kinase with PASTA sensor(s) (643 aa)
 
 
  0.930
mraY
phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan (356 aa)
 
  0.889
Psed_4870
Penicillin-binding protein transpeptidase (970 aa)
 
 
  0.886
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation (476 aa)
 
 
  0.885
Psed_4707
Penicillin-binding protein transpeptidase (621 aa)
 
  0.880
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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