STRINGSTRING
Psed_0130 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0130" - Amidohydrolase in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0130Amidohydrolase (354 aa)    
Predicted Functional Partners:
Psed_0129
Hypothetical protein (237 aa)
 
          0.962
Psed_0131
Molecular chaperone GroES (342 aa)
 
          0.939
Psed_0632
Monooxygenase component MmoB/DmpM (125 aa)
 
     
  0.855
Psed_0631
Methane/phenol/toluene hydroxylase (395 aa)
 
          0.820
Psed_0629
Methane monooxygenase (550 aa)
 
     
  0.806
Psed_0630
ferredoxin--NAD(+) reductase (351 aa)
 
     
  0.717
Psed_0628
Fis family transcriptional regulator (636 aa)
 
          0.678
Psed_0128
Haloacid dehalogenase (227 aa)
 
          0.603
Psed_5997
Fis family transcriptional regulator (503 aa)
 
          0.540
Psed_5012
Antibiotic biosynthesis monooxygenase (106 aa)
 
          0.502
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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