STRINGSTRING
Psed_0134 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0134" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0134Hypothetical protein (177 aa)    
Predicted Functional Partners:
Psed_0136
Dihydrolipoyl dehydrogenase (470 aa)
              0.834
Psed_0135
NAD-dependent epimerase/dehydratase (218 aa)
              0.834
Psed_0133
long-chain-fatty-acid--CoA ligase (604 aa)
              0.662
Psed_1998
Hypothetical protein (117 aa)
   
          0.651
Psed_1732
FmdB family regulatory protein (74 aa)
   
          0.590
Psed_4037
Hypothetical protein (240 aa)
   
          0.583
Psed_0107
Dipeptidylaminopeptidase/acylaminoacyl- peptidase-like protein (366 aa)
   
          0.500
Psed_3540
Hypothetical protein (278 aa)
   
          0.471
Psed_5626
Hypothetical protein (526 aa)
   
          0.470
Psed_0132
Limonene-12-epoxide hydrolase (141 aa)
              0.452
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (6%) [HD]