STRINGSTRING
Psed_0142 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0142" - RecB family nuclease in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0142RecB family nuclease (585 aa)    
Predicted Functional Partners:
Psed_0141
Hypothetical protein (235 aa)
 
          0.916
Psed_1712
DivIVA domain-containing protein (304 aa)
   
          0.778
Psed_3569
Hypothetical protein (398 aa)
   
          0.777
Psed_0169
Hypothetical protein (407 aa)
   
          0.776
Psed_1068
Hypothetical protein (417 aa)
   
          0.774
Psed_6657
Integral membrane protein (473 aa)
   
          0.773
Psed_6514
Hypothetical protein (225 aa)
   
          0.773
Psed_3867
Hypothetical protein (166 aa)
   
          0.773
Psed_6542
Hypothetical protein (220 aa)
   
          0.772
Psed_5297
Hypothetical protein (358 aa)
   
          0.767
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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