STRINGSTRING
Psed_0154 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0154" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0154Hypothetical protein (518 aa)    
Predicted Functional Partners:
Psed_0155
Na+/solute symporter (579 aa)
 
          0.924
Psed_0156
Na+/solute symporter (580 aa)
 
          0.922
Psed_3424
Hypothetical protein (235 aa)
   
          0.732
Psed_6602
Von Willebrand factor A (818 aa)
   
          0.712
Psed_0157
Rhodanese-like protein (109 aa)
              0.686
Psed_0153
LytTR family two component transcriptional regulator (288 aa)
 
          0.656
Psed_0111
Hypothetical protein (164 aa)
   
          0.602
Psed_0909
Integrase catalytic subunit (512 aa)
   
          0.585
Psed_1256
Integrase catalytic subunit (512 aa)
   
          0.585
Psed_0909
Integrase catalytic subunit (512 aa)
   
          0.585
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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