STRINGSTRING
Psed_0188 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0188" - Glycosyltransferase in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0188Glycosyltransferase (645 aa)    
Predicted Functional Partners:
Psed_0185
UDP-galactopyranose mutase (397 aa)
 
   
  0.874
Psed_0189
Cell wall arabinan synthesis protein (995 aa)
 
   
  0.829
Psed_0206
Family 2 glycosyl transferase (304 aa)
 
     
  0.807
Psed_5214
Family 2 glycosyl transferase (301 aa)
 
     
  0.783
Psed_0205
GtrA family protein (146 aa)
 
   
  0.738
Psed_0174
Phosphoesterase PA-phosphatase-like protein (215 aa)
 
          0.713
Psed_0184
Hypothetical protein (701 aa)
   
          0.680
Psed_0186
Hypothetical protein (573 aa)
   
          0.648
Psed_3995
ABC transporter substrate-binding protein (324 aa)
     
      0.622
Psed_0248
ABC transporter substrate-binding protein (343 aa)
     
      0.622
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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