STRINGSTRING
Psed_0197 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0197" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0197Hypothetical protein (203 aa)    
Predicted Functional Partners:
Psed_5019
Hypothetical protein (188 aa)
   
          0.773
Psed_0196
Hypothetical protein (586 aa)
              0.745
Psed_2718
Hypothetical protein (149 aa)
   
          0.644
Psed_0454
Hypothetical protein (99 aa)
   
          0.597
Psed_0194
Short-chain dehydrogenase/reductase SDR (251 aa)
 
          0.575
Psed_6200
PspA/IM30 family protein (212 aa)
   
          0.567
Psed_5274
AIG2 family protein (149 aa)
   
        0.530
Psed_0195
FAD linked oxidase domain-containing protein (457 aa)
              0.515
Psed_0334
Hypothetical protein (170 aa)
   
          0.508
Psed_5644
Hypothetical protein (159 aa)
   
          0.500
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (6%) [HD]