STRINGSTRING
Psed_0204 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0204" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0204Hypothetical protein (239 aa)    
Predicted Functional Partners:
Psed_0203
Hypothetical protein (73 aa)
              0.789
Psed_0202
LuxR family transcriptional regulator (890 aa)
 
          0.663
Psed_5862
Hypothetical protein (246 aa)
   
          0.640
Psed_4213
Alpha/beta hydrolase (287 aa)
   
          0.594
Psed_0205
GtrA family protein (146 aa)
              0.535
Psed_5873
Transcriptional regulator CdaR (409 aa)
   
          0.511
Psed_0558
Major facilitator superfamily protein (395 aa)
   
          0.510
Psed_0198
ABC transporter (249 aa)
 
          0.505
Psed_1960
CsbD family protein (57 aa)
   
          0.473
Psed_0049
Transposase (409 aa)
   
          0.469
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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