STRINGSTRING
Psed_0211 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0211" - GCN5-like N-acetyltransferase in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0211GCN5-like N-acetyltransferase (215 aa)    
Predicted Functional Partners:
rpsD
30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit (201 aa)
   
      0.713
Psed_0209
Hypothetical protein (184 aa)
 
          0.702
Psed_0210
NAD(P)H quinone oxidoreductase (339 aa)
   
        0.681
Psed_0249
L-lysine 6-monooxygenase (441 aa)
   
   
  0.584
Psed_6522
Hypothetical protein (137 aa)
   
          0.488
Psed_1887
DegT/DnrJ/EryC1/StrS aminotransferase (386 aa)
   
   
  0.487
Psed_1886
DegT/DnrJ/EryC1/StrS aminotransferase (369 aa)
   
   
  0.487
Psed_4516
Hypothetical protein (650 aa)
 
          0.486
Psed_3174
Hypothetical protein (219 aa)
   
          0.469
Psed_2841
Hypothetical protein (206 aa)
   
          0.460
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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