STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0215KEGG: azl:AZL_012780 flavin reductase; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding. (183 aa)    
Predicted Functional Partners:
Psed_0216
TIGRFAM: 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component; KEGG: gtn:GTNG_3160 putative aromatic compound hydroxylase; PFAM: 4-hydroxyphenylacetate 3-hydroxylase.
 
  
 0.849
Psed_0214
PFAM: Alpha/beta hydrolase fold-1; KEGG: fri:FraEuI1c_5356 alpha/beta hydrolase fold protein.
  
  
 0.788
Psed_0217
3-carboxyethylcatechol 2,3-dioxygenase; KEGG: amd:AMED_5706 2,3-dihydroxyphenylpropionate 1,2-dioxygenase; PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B.
  
  
 0.787
Psed_0218
KEGG: swi:Swit_1555 hypothetical protein.
       0.694
Psed_0219
KEGG: cai:Caci_6492 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR.
       0.433
Psed_0220
Peroxidase; KEGG: sco:SCO3636 cytochrome P-450 hydroxylase; PFAM: Cytochrome P450.
       0.425
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.