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Psed_0223 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0223" - NAD-dependent epimerase/dehydratase in Pseudonocardia dioxanivorans
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0223NAD-dependent epimerase/dehydratase (298 aa)    
Predicted Functional Partners:
Psed_0222
TetR family transcriptional regulator (186 aa)
 
          0.888
Psed_6429
TetR family transcriptional regulator (184 aa)
 
          0.721
Psed_5009
Estradiol 17-beta-dehydrogenase (274 aa)
 
 
  0.698
Psed_3677
Squalene synthase HpnD (310 aa)
   
 
  0.674
Psed_3676
Squalene synthase HpnC (327 aa)
   
 
  0.674
Psed_2781
Phytoene synthase (336 aa)
   
 
  0.674
Psed_3763
Short-chain dehydrogenase/reductase SDR (278 aa)
 
 
  0.659
Psed_1850
Oxidoreductase domain-containing protein (735 aa)
   
   
  0.650
Psed_1893
dTDP-4-dehydrorhamnose 3,5-epimerase (180 aa)
   
 
  0.643
sigA
RpoD subfamily RNA polymerase sigma-70 subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth (461 aa)
   
 
  0.626
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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