STRINGSTRING
Psed_0243 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0243" - LuxR family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0243LuxR family transcriptional regulator (524 aa)    
Predicted Functional Partners:
Psed_0241
Hypothetical protein (121 aa)
 
          0.864
Psed_0469
Diguanylate cyclase (286 aa)
 
  0.685
Psed_0440
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase (734 aa)
 
 
  0.670
Psed_5134
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase (925 aa)
 
 
  0.660
Psed_2886
Diguanylate cyclase (435 aa)
 
  0.657
Psed_2887
Diguanylate cyclase (455 aa)
 
  0.649
Psed_4081
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase (714 aa)
 
 
  0.630
Psed_0242
Hypothetical protein (127 aa)
              0.606
Psed_0244
Extradiol ring-cleavage dioxygenase class III protein subunit B (301 aa)
              0.597
Psed_0957
Diguanylate phosphodiesterase (396 aa)
 
 
  0.591
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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