STRINGSTRING
Psed_0244 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0244" - Extradiol ring-cleavage dioxygenase class III protein subunit B in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0244Extradiol ring-cleavage dioxygenase class III protein subunit B (301 aa)    
Predicted Functional Partners:
Psed_2139
Pirin (255 aa)
 
   
  0.708
Psed_0243
LuxR family transcriptional regulator (524 aa)
              0.597
Psed_3628
Pirin (328 aa)
 
   
  0.521
Psed_4627
Hypothetical protein (270 aa)
         
  0.501
Psed_3310
Hypothetical protein (186 aa)
         
  0.501
Psed_4293
2-oxopent-4-enoate hydratase (269 aa)
   
   
  0.489
Psed_4292
4-oxalocrotonate decarboxylase (256 aa)
   
   
  0.489
Psed_4285
2-oxopent-4-enoate hydratase (277 aa)
   
   
  0.489
Psed_2524
2-oxopent-4-enoate hydratase (267 aa)
   
   
  0.489
Psed_2523
2-oxopent-4-enoate hydratase (252 aa)
   
   
  0.489
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (9%) [HD]