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Psed_0248 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0248" - ABC transporter substrate-binding protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0248ABC transporter substrate-binding protein (343 aa)    
Predicted Functional Partners:
Psed_0247
ABC transporter permease (345 aa)
 
 
  0.987
Psed_2914
Iron-chelate-transporting ATPase (277 aa)
 
  0.987
Psed_0246
ABC transporter permease (361 aa)
 
 
  0.986
Psed_2912
ABC transporter permease (347 aa)
 
 
  0.974
Psed_2913
ABC transporter permease (367 aa)
 
  0.962
Psed_2033
ABC transporter substrate-binding protein (342 aa)
   
 
0.906
Psed_3995
ABC transporter substrate-binding protein (324 aa)
   
   
 
0.832
Psed_2016
ABC transporter (272 aa)
   
 
    0.807
Psed_1734
ABC transporter (285 aa)
   
 
    0.807
Psed_3104
Periplasmic binding protein (294 aa)
         
    0.800
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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