STRINGSTRING
Psed_0276 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0276" - Major facilitator superfamily protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0276Major facilitator superfamily protein (475 aa)    
Predicted Functional Partners:
Psed_5984
Major facilitator superfamily protein (531 aa)
   
          0.777
Psed_1803
Major facilitator superfamily protein (502 aa)
   
          0.777
Psed_5865
Major facilitator superfamily protein (579 aa)
   
          0.747
Psed_0277
Pentachlorophenol monooxygenase (553 aa)
   
 
  0.682
Psed_0275
Lactonase, 7-bladed beta propeller (361 aa)
              0.642
Psed_3328
Major facilitator superfamily protein (367 aa)
   
          0.633
Psed_0278
Redoxin domain-containing protein (161 aa)
   
      0.495
Psed_3588
DNA polymerase I (939 aa)
   
   
  0.479
Psed_6597
Isoquinoline 1-oxidoreductase (753 aa)
     
      0.472
Psed_6473
Carbon-monoxide dehydrogenase (806 aa)
     
      0.472
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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