STRINGSTRING
Psed_0298 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0298" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0298Hypothetical protein (227 aa)    
Predicted Functional Partners:
Psed_0300
Pyridoxine 4-dehydrogenase (336 aa)
              0.599
Psed_0299
F420-dependent protein (132 aa)
              0.599
Psed_0969
DNA repair protein and transcriptional regulator (514 aa)
              0.571
Psed_0301
Alcohol dehydrogenase (391 aa)
              0.458
Psed_5210
3-methyl-adenine DNA glycosylase (305 aa)
              0.412
Psed_4537
3-methyl-adenine DNA glycosylase (340 aa)
              0.412
Psed_2003
Alkylated DNA repair protein (205 aa)
              0.412
Psed_0968
methylated-DNA--protein-cysteine methyltransferase (164 aa)
              0.412
Psed_0290
methylated-DNA--protein-cysteine methyltransferase (245 aa)
              0.412
Psed_0144
methylated-DNA--protein-cysteine methyltransferase (183 aa)
              0.412
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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