STRINGSTRING
Psed_0299 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0299" - F420-dependent protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0299F420-dependent protein (132 aa)    
Predicted Functional Partners:
Psed_0300
Pyridoxine 4-dehydrogenase (336 aa)
              0.863
Psed_4041
F420-dependent oxidoreductase (290 aa)
   
          0.666
Psed_6332
F420-dependent oxidoreductase (289 aa)
   
          0.657
Psed_0301
Alcohol dehydrogenase (391 aa)
              0.638
Psed_2531
Hypothetical protein (157 aa)
   
     
  0.604
Psed_1971
F420-dependent protein (166 aa)
   
          0.604
Psed_0298
Hypothetical protein (227 aa)
              0.599
Psed_1473
F420-dependent oxidoreductase (309 aa)
   
          0.574
Psed_1797
F420-dependent oxidoreductase (309 aa)
 
          0.568
Psed_4583
Hypothetical protein (142 aa)
   
     
  0.563
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (7%) [HD]