STRINGSTRING
Psed_0300 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0300" - Pyridoxine 4-dehydrogenase in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0300Pyridoxine 4-dehydrogenase (336 aa)    
Predicted Functional Partners:
Psed_0299
F420-dependent protein (132 aa)
              0.863
Psed_1101
TrkA-N domain-containing protein (352 aa)
   
    0.809
Psed_0424
Ion transport 2 domain-containing protein (255 aa)
   
    0.809
Psed_0301
Alcohol dehydrogenase (391 aa)
   
        0.654
Psed_0298
Hypothetical protein (227 aa)
              0.599
Psed_2147
2,5-didehydrogluconate reductase (272 aa)
 
   
0.570
Psed_5591
2,5-didehydrogluconate reductase (275 aa)
 
   
0.562
Psed_3745
Cupin (130 aa)
 
          0.535
Psed_2873
CoA-binding domain-containing protein (166 aa)
   
      0.526
Psed_6460
Carboxymuconolactone decarboxylase (128 aa)
   
        0.493
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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