STRINGSTRING
Psed_0307 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0307" - Cystathionine beta-lyase in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0307Cystathionine beta-lyase (386 aa)    
Predicted Functional Partners:
Psed_3633
Cystathionine gamma-synthase (390 aa)
       
  0.950
Psed_1840
Cystathionine gamma-lyase (366 aa)
       
  0.950
Psed_0939
Cys/Met metabolism pyridoxal-phosphate-dependent protein (382 aa)
       
  0.950
Psed_6012
Aspartate transaminase (391 aa)
 
   
0.927
Psed_1511
Cysteine synthase (316 aa)
       
  0.923
Psed_0126
vitamin-B12 independent methionine synthase (366 aa)
       
  0.917
Psed_4039
Cysteine synthase (373 aa)
       
  0.915
Psed_3326
Methionine synthase (1190 aa)
       
  0.913
Psed_2107
Methionine synthase (603 aa)
       
  0.911
Psed_4686
O-acetylhomoserine/O-acetylserine sulfhydrylase (437 aa)
       
  0.910
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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