STRINGSTRING
Psed_0320 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0320" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0320Hypothetical protein (204 aa)    
Predicted Functional Partners:
Psed_0321
TetR family transcriptional regulator (251 aa)
              0.859
Psed_0323
ABC transporter (265 aa)
              0.641
Psed_0322
Polyamine-transporting ATPase (319 aa)
              0.641
Psed_6496
Hypothetical protein (98 aa)
   
          0.529
Psed_1586
Hypothetical protein (933 aa)
   
          0.480
Psed_4697
Hypothetical protein (241 aa)
   
          0.475
Psed_0233
Transglycosylase associated protein (90 aa)
   
          0.438
Psed_5594
ANTAR domain-containing protein (221 aa)
   
          0.436
Psed_4683
Cold-shock DNA-binding domain-containing protein (315 aa)
   
          0.409
Psed_3502
Hypothetical protein (380 aa)
   
          0.407
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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