STRINGSTRING
Psed_0321 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0321" - TetR family transcriptional regulator in Pseudonocardia dioxanivorans
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0321TetR family transcriptional regulator (251 aa)    
Predicted Functional Partners:
Psed_0320
Hypothetical protein (204 aa)
              0.859
Psed_0323
ABC transporter (265 aa)
 
          0.711
Psed_0322
Polyamine-transporting ATPase (319 aa)
              0.648
Psed_3002
TetR family transcriptional regulator (141 aa)
   
          0.554
Psed_6325
Winged helix family transcriptional regulator (1029 aa)
   
          0.523
Psed_4912
LuxR family transcriptional regulator (917 aa)
   
          0.473
Psed_4495
Hypothetical protein (141 aa)
   
          0.445
Psed_4576
TetR family transcriptional regulator (257 aa)
   
          0.432
Psed_1930
Bifunctional deaminase-reductase domain-containing protein (192 aa)
   
          0.430
Psed_6410
Peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin (219 aa)
   
          0.412
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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