STRINGSTRING
Psed_0347 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0347" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0347Hypothetical protein (240 aa)    
Predicted Functional Partners:
Psed_5233
Excisionase (59 aa)
   
          0.727
Psed_1637
Ketopantoate reductase ApbA/PanE domain-containing protein (328 aa)
   
          0.578
Psed_0955
Ketopantoate reductase ApbA/PanE domain-containing protein (344 aa)
   
          0.567
Psed_0719
TetR family transcriptional regulator (197 aa)
   
          0.560
Psed_1137
Ion transport 2 domain-containing protein (185 aa)
   
          0.521
Psed_1218
Hypothetical protein (847 aa)
   
          0.519
Psed_6657
Integral membrane protein (473 aa)
   
          0.498
Psed_1420
Hypothetical protein (215 aa)
   
          0.482
Psed_1815
DoxX family protein (198 aa)
   
          0.469
Psed_3295
Hypothetical protein (374 aa)
   
          0.458
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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