STRINGSTRING
Psed_0353 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0353" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0353Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection (113 aa)    
Predicted Functional Partners:
recR
Recombination protein recR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO (205 aa)
 
   
  0.929
Psed_0352
Cell wall hydrolase/autolysin (276 aa)
              0.664
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation (476 aa)
 
          0.607
Psed_5300
Serine-type D-Ala-D-Ala carboxypeptidase (411 aa)
 
        0.579
tadA
CMP/dCMP deaminase zinc-binding protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) (153 aa)
 
          0.578
Psed_5351
Inosine-5’-monophosphate dehydrogenase (501 aa)
              0.545
Psed_0954
IMP dehydrogenase (483 aa)
              0.545
Psed_5549
2-oxoacid-acceptor oxidoreductase subunit alpha (647 aa)
              0.476
Psed_0348
DNA polymerase III subunits gamma and tau (829 aa)
   
   
  0.469
Psed_2801
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase (501 aa)
   
        0.463
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (9%) [HD]