STRINGSTRING
Psed_0374 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0374" - Cupin in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0374Cupin (162 aa)    
Predicted Functional Partners:
Psed_0373
TetR family transcriptional regulator (219 aa)
 
          0.881
Psed_0926
Cupin (151 aa)
   
          0.768
Psed_3108
Hypothetical protein (233 aa)
   
          0.542
Psed_1789
Hypothetical protein (239 aa)
   
          0.531
Psed_3474
Hypothetical protein (139 aa)
   
          0.505
Psed_6195
TetR family transcriptional regulator (224 aa)
   
          0.480
Psed_5879
Hypothetical protein (138 aa)
   
          0.480
Psed_3438
Cupin (154 aa)
   
          0.437
Psed_3109
Hypothetical protein (263 aa)
   
          0.434
Psed_6198
Hypothetical protein (155 aa)
   
          0.421
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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