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Psed_0376 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0376" - ECF subfamily RNA polymerase sigma-24 subunit in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0376ECF subfamily RNA polymerase sigma-24 subunit (413 aa)    
Predicted Functional Partners:
Psed_0377
Hypothetical protein (121 aa)
 
          0.980
Psed_3956
Hypothetical protein (130 aa)
 
          0.864
Psed_3775
Hypothetical protein (128 aa)
 
          0.864
Psed_0934
Hypothetical protein (119 aa)
 
          0.864
Psed_0094
Hypothetical protein (140 aa)
 
          0.856
Psed_4118
Hypothetical protein (113 aa)
 
          0.841
Psed_0378
Bifunctional deaminase-reductase domain-containing protein (211 aa)
              0.587
Psed_4156
NADPH-quinone reductase (346 aa)
           
  0.583
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) (270 aa)
           
  0.583
Psed_3350
Succinate-semialdehyde dehydrogenase (489 aa)
           
  0.583
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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