STRINGSTRING
Psed_0387 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0387" - AraC family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0387AraC family transcriptional regulator (324 aa)    
Predicted Functional Partners:
Psed_0386
ThiJ/PfpI domain-containing protein (212 aa)
 
       
0.911
Psed_0388
Acetylcholinesterase (465 aa)
              0.614
lysS
lysyl-tRNA synthetase (500 aa)
       
      0.613
Psed_1149
ThiJ/PfpI domain-containing protein (210 aa)
 
       
0.543
Psed_0385
Radical SAM domain-containing protein (531 aa)
              0.530
Psed_6320
AraC family transcriptional regulator (154 aa)
 
          0.446
Psed_4984
Isochorismatase hydrolase (200 aa)
              0.412
Psed_4797
Isochorismatase hydrolase (200 aa)
              0.412
Psed_4639
Isochorismatase hydrolase (206 aa)
              0.412
Psed_4173
Isochorismatase hydrolase (217 aa)
              0.412
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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