STRINGSTRING
Psed_0388 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0388" - Acetylcholinesterase in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0388Acetylcholinesterase (465 aa)    
Predicted Functional Partners:
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP (220 aa)
     
    0.767
Psed_6572
UDP-N-acetylglucosamine 2-epimerase (372 aa)
       
      0.663
Psed_0387
AraC family transcriptional regulator (324 aa)
              0.614
Psed_0386
ThiJ/PfpI domain-containing protein (212 aa)
   
        0.600
Psed_0390
Hypothetical protein (135 aa)
              0.539
Psed_0389
Hypothetical protein (207 aa)
              0.539
Psed_3372
Von Willebrand factor A (327 aa)
     
      0.523
Psed_0414
Von Willebrand factor A (362 aa)
     
      0.523
Psed_0413
Von Willebrand factor A (332 aa)
     
      0.523
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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