STRINGSTRING
Psed_0400 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0400" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0400Hypothetical protein (84 aa)    
Predicted Functional Partners:
Psed_0401
Type II secretion system F domain-containing protein (243 aa)
 
          0.755
Psed_0404
Helicase/secretion CpaE-like protein (359 aa)
 
          0.752
Psed_0399
Helicase/secretion neighborhood TadE-like protein (328 aa)
              0.745
Psed_0403
Helicase/secretion ATPase (382 aa)
 
          0.730
Psed_0402
Type II secretion system F domain-containing protein (269 aa)
              0.679
Psed_1981
Cupin (116 aa)
   
          0.559
Psed_4633
Cupin (132 aa)
   
          0.528
Psed_3060
OB-fold tRNA/helicase-type nucleic acid binding-protein (125 aa)
   
          0.437
Psed_0154
Hypothetical protein (518 aa)
   
          0.437
Psed_5146
Pyridoxamine 5’-phosphate oxidase-related FMN-binding protein (163 aa)
   
          0.423
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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