STRINGSTRING
Psed_0401 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0401" - Type II secretion system F domain-containing protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0401Type II secretion system F domain-containing protein (243 aa)    
Predicted Functional Partners:
Psed_0404
Helicase/secretion CpaE-like protein (359 aa)
 
          0.915
Psed_0403
Helicase/secretion ATPase (382 aa)
 
          0.897
Psed_0402
Type II secretion system F domain-containing protein (269 aa)
              0.875
Psed_0400
Hypothetical protein (84 aa)
 
          0.755
Psed_3400
Mannosyltransferase (534 aa)
   
          0.616
Psed_0399
Helicase/secretion neighborhood TadE-like protein (328 aa)
              0.605
Psed_4522
Hypothetical protein (197 aa)
   
          0.580
Psed_5329
ATPase AAA (710 aa)
   
          0.557
Psed_5171
Hypothetical protein (168 aa)
   
          0.548
Psed_3384
TetR family transcriptional regulator (200 aa)
   
          0.495
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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