STRINGSTRING
Psed_0403 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0403" - Helicase/secretion ATPase in Pseudonocardia dioxanivorans
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0403Helicase/secretion ATPase (382 aa)    
Predicted Functional Partners:
Psed_0404
Helicase/secretion CpaE-like protein (359 aa)
            0.941
Psed_0401
Type II secretion system F domain-containing protein (243 aa)
 
          0.897
Psed_0402
Type II secretion system F domain-containing protein (269 aa)
              0.881
Psed_0400
Hypothetical protein (84 aa)
 
          0.730
Psed_0399
Helicase/secretion neighborhood TadE-like protein (328 aa)
              0.617
Psed_1216
Type IV secretory pathway VirB4 components-like protein (636 aa)
         
  0.473
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA super [...] (952 aa)
            0.473
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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