STRINGSTRING
Psed_0406 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0406" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0406Hypothetical protein (251 aa)    
Predicted Functional Partners:
Psed_5644
Hypothetical protein (159 aa)
   
          0.755
Psed_2769
Cyclase (144 aa)
   
          0.727
Psed_3952
Hypothetical protein (151 aa)
   
          0.691
acsA
Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA (658 aa)
              0.672
Psed_6674
Hypothetical protein (784 aa)
   
          0.622
Psed_0454
Hypothetical protein (99 aa)
   
          0.618
Psed_6600
acyl-CoA dehydrogenase (619 aa)
   
          0.615
Psed_5352
Hypothetical protein (126 aa)
   
          0.583
Psed_0334
Hypothetical protein (170 aa)
   
          0.583
Psed_0417
Hypothetical protein (161 aa)
 
          0.565
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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