STRINGSTRING
Psed_0412 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0412" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0412Hypothetical protein (296 aa)    
Predicted Functional Partners:
Psed_0411
ATPase (330 aa)
 
   
  0.982
Psed_0414
Von Willebrand factor A (362 aa)
 
        0.980
Psed_0413
Von Willebrand factor A (332 aa)
 
        0.980
Psed_3374
ATPase (358 aa)
 
   
  0.878
Psed_0410
Peptidase S1 and S6 chymotrypsin/Hap (247 aa)
              0.878
Psed_3372
Von Willebrand factor A (327 aa)
 
        0.866
Psed_2797
ATPase (341 aa)
 
   
  0.810
Psed_0415
Class I peptide chain release factor (142 aa)
              0.753
Psed_0725
Acid phosphatase (311 aa)
 
          0.549
Psed_0416
Na(+)/H(+) antiporter NhaA; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons (406 aa)
              0.543
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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