STRINGSTRING
Psed_0445 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0445" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0445Hypothetical protein (316 aa)    
Predicted Functional Partners:
Psed_0444
GntR family transcriptional regulator (119 aa)
 
          0.944
Psed_4817
ABC transporter permease (271 aa)
   
          0.627
Psed_5987
Hypothetical protein (157 aa)
   
          0.607
Psed_1935
Hypothetical protein (118 aa)
   
          0.605
Psed_5236
TetR family transcriptional regulator (255 aa)
   
          0.559
Psed_5210
3-methyl-adenine DNA glycosylase (305 aa)
   
          0.558
Psed_2645
Hypothetical protein (316 aa)
   
          0.537
Psed_4038
Hypothetical protein (521 aa)
   
          0.526
Psed_0443
NUDIX hydrolase (231 aa)
              0.525
Psed_4036
Hypothetical protein (1506 aa)
   
          0.516
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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