STRINGSTRING
Psed_0446 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0446" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0446Hypothetical protein (68 aa)    
Predicted Functional Partners:
Psed_1022
Hypothetical protein (55 aa)
   
          0.749
Psed_0447
Hypothetical protein (276 aa)
              0.610
Psed_1530
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA (97 aa)
   
          0.542
Psed_1066
RecB family exonuclease (296 aa)
   
          0.536
Psed_0445
Hypothetical protein (316 aa)
              0.515
Psed_0444
GntR family transcriptional regulator (119 aa)
              0.515
Psed_3416
Preprotein translocase subunit SecG (77 aa)
   
          0.470
Psed_3357
Hypothetical protein (288 aa)
   
          0.460
secD
Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA (607 aa)
   
          0.450
Psed_6226
Hypothetical protein (303 aa)
   
          0.426
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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