STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0471KEGG: svi:Svir_37580 hypothetical protein. (195 aa)    
Predicted Functional Partners:
Psed_6403
PFAM: Heavy metal transport/detoxification protein; KEGG: mil:ML5_0770 heavy metal transport/detoxification protein.
 
 0.853
Psed_0565
PFAM: Heavy metal transport/detoxification protein; KEGG: gbr:Gbro_4238 heavy metal transport/detoxification protein.
  
 0.834
Psed_1290
PFAM: Heavy metal transport/detoxification protein; KEGG: mmg:MTBMA_c01180 cation transport ATPase.
  
 0.834
Psed_1303
PFAM: Heavy metal transport/detoxification protein; KEGG: bae:BATR1942_14715 copper insertion chaperone and transporter component.
  
 0.834
Psed_4713
KEGG: amd:AMED_2035 hypothetical protein.
  
 
   0.820
Psed_5669
Manganese/iron superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
 
 0.818
Psed_4106
Catalase; KEGG: sgr:SGR_1958 putative catalase; PFAM: Catalase-related subgroup; Catalase-related immune responsive; Belongs to the catalase family.
  
 0.780
Psed_2754
PFAM: Cytochrome b/b6, N-terminal; KEGG: ami:Amir_1376 cytochrome b/b6 domain protein.
    
 
 0.773
Psed_0470
TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
       0.747
Psed_3472
KEGG: svi:Svir_35080 protein of unknown function (DUF461).
  
 
   0.673
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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