STRINGSTRING
Psed_0495 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0495" - TetR family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0495TetR family transcriptional regulator (359 aa)    
Predicted Functional Partners:
Psed_0494
Cytochrome P450 (396 aa)
 
          0.694
Psed_4811
N-6 DNA methylase (585 aa)
   
          0.529
Psed_0652
Hypothetical protein (435 aa)
   
          0.489
Psed_0268
Isoquinoline 1-oxidoreductase (778 aa)
   
          0.476
Psed_0830
Chorismate mutase (201 aa)
   
          0.468
Psed_5544
Hypothetical protein (185 aa)
 
          0.460
Psed_4786
Hypothetical protein (203 aa)
   
          0.454
Psed_0992
Hypothetical protein (346 aa)
   
          0.443
Psed_0184
Hypothetical protein (701 aa)
   
          0.417
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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