STRINGSTRING
Psed_0497 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0497" - Regulatory protein ArsR in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0497Regulatory protein ArsR (250 aa)    
Predicted Functional Partners:
Psed_0498
Transposase IS116/IS110/IS902 family protein (354 aa)
              0.820
Psed_5006
Antibiotic biosynthesis monooxygenase (225 aa)
 
          0.698
Psed_2107
Methionine synthase (603 aa)
         
  0.639
Psed_1083
UBA/THIF-type NAD/FAD binding protein (390 aa)
   
 
  0.635
Psed_3326
Methionine synthase (1190 aa)
         
  0.633
Psed_5687
2,4-dienoyl-CoA reductase (650 aa)
   
   
  0.624
Psed_1556
2,4-dienoyl-CoA reductase (675 aa)
   
   
  0.624
Psed_0496
Hypothetical protein (377 aa)
              0.579
Psed_2935
Citrate transporter (469 aa)
   
   
  0.532
Psed_1269
Type 11 methyltransferase (270 aa)
 
     
  0.529
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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